Index

A

apply_filter() (in module rocco.readtracks)

apply_transformation() (in module rocco.readtracks)

C

chrom_solution_to_bed() (in module rocco.rocco)

combine_chrom_results() (in module rocco.rocco) cscores_quantiles() (in module rocco.rocco)

D

decompress_features_vals() (in module rocco.readtracks)

G

generate_bigwig() (in module rocco.readtracks) generate_bigwigs() (in module rocco.readtracks) generate_chrom_matrix() (in module rocco.readtracks) get_chrom_reads() (in module rocco.readtracks) get_chroms_and_sizes() (in module rocco.readtracks) get_ecdf() (in module rocco.scores)

get_file_path() (in module rocco.constants) get_floor_eps_sol() (in module rocco.rocco) get_read_length() (in module rocco.scores) get_rround_sol() (in module rocco.rocco) get_shape() (in module rocco.readtracks) get_warm_idx() (in module rocco.rocco)

M

minmax_scale_scores() (in module rocco.rocco) module rocco.constants rocco.readtracks rocco.rocco rocco.scores

multi_ecdf() (in module rocco.scores)

P

parsig() (in module rocco.rocco)

R

raw_count_matrix() (in module rocco.scores) resolve_config() (in module rocco.rocco) resolve_transformations() (in module rocco.rocco) rocco.constants module

rocco.readtracks module rocco.rocco module rocco.scores module

S

score_boundary_chrom() (in module rocco.rocco) score_central_tendency_chrom() (in module rocco.rocco) score_chrom_linear() (in module rocco.rocco)

score_dispersion_chrom() (in module rocco.rocco) score_peaks() (in module rocco.scores) solve_relaxation_chrom_glop() (in module rocco.rocco) solve_relaxation_chrom_pdlp() (in module rocco.rocco)

W

wrap_run_ecdf() (in module rocco.scores)